PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AMDW01136750.1_FGP001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 44aa    MW: 5232.15 Da    PI: 9.949
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AMDW01136750.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.19.7e-112401255
                           HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  AMDW01136750.1_FGP001  2 RRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 40
                           9*****************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.367139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0011144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-13243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.75E-6244No hitNo description
PfamPF000105.3E-8240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-13343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 44 aa     Download sequence    Send to blast
LRRERIAERM KSLQELVPNA NKTDKASMLD EIIDYVKFLQ LQVK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0620762e-39BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds.
GenBankKJ7279382e-39KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548502.15e-23PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH66
RefseqXP_015693472.16e-23PREDICTED: transcription factor bHLH69-like
SwissprotQ8S3D52e-24BH069_ARATH; Transcription factor bHLH69
TrEMBLM0VYI91e-23M0VYI9_HORVD; Uncharacterized protein
TrEMBLM7YN071e-24M7YN07_TRIUA; Transcription factor bHLH69
STRINGMLOC_38567.14e-23(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.11e-25LJRHL1-like 2